Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eqd-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eqd-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eqd-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eqd-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68390884 total, 54252 skipped (flags/unmapped)
Fragments: 34303655 total (33999663 tlen-paired, 3329 hash-paired, 331 singletons, 11543 discordant, 288789 orphans, 9221 too large [>5000 bp], 12814345 duplicates)
Reads: 73692470 total, 47653 skipped (flags/unmapped)
Fragments: 36966275 total (36648197 tlen-paired, 3334 hash-paired, 371 singletons, 7885 discordant, 306488 orphans, 9563 too large [>5000 bp], 13625523 duplicates)
Reads: 80588679 total, 48613 skipped (flags/unmapped)
Fragments: 40430641 total (40063274 tlen-paired, 3515 hash-paired, 272 singletons, 12040 discordant, 351540 orphans, 15298 too large [>5000 bp], 15206895 duplicates)
Reads: 81431050 total, 83353 skipped (flags/unmapped)
Fragments: 40977567 total (40036352 tlen-paired, 3215 hash-paired, 281 singletons, 183381 discordant, 754338 orphans, 73591 too large [>5000 bp], 15348188 duplicates)