Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_1E2-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1E2-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1E2-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1E2-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90413620 total, 66892 skipped (flags/unmapped)
Fragments: 45340494 total (44961759 tlen-paired, 4168 hash-paired, 383 singletons, 16419 discordant, 357765 orphans, 11944 too large [>5000 bp], 18307073 duplicates)
Reads: 97521625 total, 53386 skipped (flags/unmapped)
Fragments: 48912905 total (48519328 tlen-paired, 2813 hash-paired, 519 singletons, 11169 discordant, 379076 orphans, 11012 too large [>5000 bp], 19387612 duplicates)
Reads: 97696824 total, 59794 skipped (flags/unmapped)
Fragments: 49002000 total (48585542 tlen-paired, 5559 hash-paired, 319 singletons, 14279 discordant, 396301 orphans, 14825 too large [>5000 bp], 19877512 duplicates)
Reads: 107520143 total, 108818 skipped (flags/unmapped)
Fragments: 54061690 total (52948910 tlen-paired, 3910 hash-paired, 442 singletons, 220067 discordant, 888361 orphans, 88374 too large [>5000 bp], 21864741 duplicates)