Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BOQK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BOQK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BOQK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BOQK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96075620 total, 55994 skipped (flags/unmapped)
Fragments: 48210214 total (47776801 tlen-paired, 2854 hash-paired, 469 singletons, 10565 discordant, 419525 orphans, 9596 too large [>5000 bp], 20382818 duplicates)
Reads: 89216041 total, 63457 skipped (flags/unmapped)
Fragments: 44763168 total (44351896 tlen-paired, 4176 hash-paired, 407 singletons, 14480 discordant, 392209 orphans, 9432 too large [>5000 bp], 19252592 duplicates)
Reads: 105628316 total, 60280 skipped (flags/unmapped)
Fragments: 53002284 total (52493149 tlen-paired, 4757 hash-paired, 362 singletons, 15286 discordant, 488730 orphans, 26280 too large [>5000 bp], 22900601 duplicates)
Reads: 107236285 total, 107285 skipped (flags/unmapped)
Fragments: 53988544 total (52670570 tlen-paired, 3992 hash-paired, 434 singletons, 259756 discordant, 1053792 orphans, 103069 too large [>5000 bp], 23258619 duplicates)