Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_NT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_NT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75488944 total, 55534 skipped (flags/unmapped)
Fragments: 37880960 total (37514656 tlen-paired, 2793 hash-paired, 403 singletons, 12113 discordant, 350995 orphans, 11444 too large [>5000 bp], 15342650 duplicates)
Reads: 89283265 total, 51587 skipped (flags/unmapped)
Fragments: 44808444 total (44387238 tlen-paired, 3172 hash-paired, 303 singletons, 12066 discordant, 405665 orphans, 10379 too large [>5000 bp], 18237295 duplicates)
Reads: 80748134 total, 46011 skipped (flags/unmapped)
Fragments: 40530127 total (40143850 tlen-paired, 2856 hash-paired, 395 singletons, 8348 discordant, 374678 orphans, 8471 too large [>5000 bp], 16120800 duplicates)
Reads: 90599528 total, 95506 skipped (flags/unmapped)
Fragments: 45636294 total (44435207 tlen-paired, 3309 hash-paired, 348 singletons, 237400 discordant, 960030 orphans, 95906 too large [>5000 bp], 18462538 duplicates)