Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dKV-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dKV-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dKV-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dKV-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68033492 total, 49093 skipped (flags/unmapped)
Fragments: 34094036 total (33860692 tlen-paired, 2645 hash-paired, 344 singletons, 9094 discordant, 221261 orphans, 8966 too large [>5000 bp], 12813998 duplicates)
Reads: 73188759 total, 42119 skipped (flags/unmapped)
Fragments: 36682763 total (36439386 tlen-paired, 2778 hash-paired, 337 singletons, 6783 discordant, 233479 orphans, 7465 too large [>5000 bp], 13539213 duplicates)
Reads: 80338278 total, 44677 skipped (flags/unmapped)
Fragments: 40268108 total (39979235 tlen-paired, 3368 hash-paired, 291 singletons, 9830 discordant, 275384 orphans, 16530 too large [>5000 bp], 15186886 duplicates)
Reads: 80732852 total, 80727 skipped (flags/unmapped)
Fragments: 40552959 total (39846845 tlen-paired, 3104 hash-paired, 312 singletons, 136243 discordant, 566455 orphans, 56487 too large [>5000 bp], 15277191 duplicates)