Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BDNK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDNK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BDNK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BDNK-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88537653 total, 50609 skipped (flags/unmapped)
Fragments: 44413393 total (44030369 tlen-paired, 2792 hash-paired, 302 singletons, 11060 discordant, 368870 orphans, 14715 too large [>5000 bp], 16337624 duplicates)
Reads: 97898387 total, 95741 skipped (flags/unmapped)
Fragments: 49243590 total (48166907 tlen-paired, 3685 hash-paired, 363 singletons, 216096 discordant, 856539 orphans, 86184 too large [>5000 bp], 18081865 duplicates)
Reads: 89538741 total, 49485 skipped (flags/unmapped)
Fragments: 44914841 total (44544592 tlen-paired, 2027 hash-paired, 456 singletons, 9458 discordant, 358308 orphans, 9169 too large [>5000 bp], 16137853 duplicates)
Reads: 82129137 total, 59030 skipped (flags/unmapped)
Fragments: 41190600 total (40843041 tlen-paired, 3310 hash-paired, 330 singletons, 12630 discordant, 331289 orphans, 10263 too large [>5000 bp], 15042642 duplicates)