Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_RW4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_RW4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_RW4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_RW4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98080320 total, 52016 skipped (flags/unmapped)
Fragments: 49162114 total (48830552 tlen-paired, 4433 hash-paired, 421 singletons, 10947 discordant, 315761 orphans, 10129 too large [>5000 bp], 18618732 duplicates)
Reads: 91182808 total, 65362 skipped (flags/unmapped)
Fragments: 45702064 total (45372430 tlen-paired, 4894 hash-paired, 408 singletons, 16118 discordant, 308214 orphans, 10970 too large [>5000 bp], 17469829 duplicates)
Reads: 107104875 total, 57264 skipped (flags/unmapped)
Fragments: 53686441 total (53281445 tlen-paired, 6375 hash-paired, 371 singletons, 16390 discordant, 381860 orphans, 28480 too large [>5000 bp], 20668050 duplicates)
Reads: 108867826 total, 102270 skipped (flags/unmapped)
Fragments: 54678665 total (53764034 tlen-paired, 4070 hash-paired, 392 singletons, 174745 discordant, 735424 orphans, 72021 too large [>5000 bp], 21052606 duplicates)