Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BT30-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BT30-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BT30-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BT30-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86929916 total, 65589 skipped (flags/unmapped)
Fragments: 43601857 total (43222200 tlen-paired, 4380 hash-paired, 457 singletons, 16270 discordant, 358550 orphans, 9810 too large [>5000 bp], 16842735 duplicates)
Reads: 95074270 total, 54631 skipped (flags/unmapped)
Fragments: 47687527 total (47294123 tlen-paired, 3649 hash-paired, 471 singletons, 11326 discordant, 377958 orphans, 11507 too large [>5000 bp], 18051207 duplicates)
Reads: 94049254 total, 58979 skipped (flags/unmapped)
Fragments: 47176626 total (46751715 tlen-paired, 5103 hash-paired, 332 singletons, 14079 discordant, 405397 orphans, 21376 too large [>5000 bp], 18323688 duplicates)
Reads: 104502572 total, 105771 skipped (flags/unmapped)
Fragments: 52550478 total (51441582 tlen-paired, 4244 hash-paired, 462 singletons, 220447 discordant, 883743 orphans, 90025 too large [>5000 bp], 20339781 duplicates)