Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eOZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eOZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eOZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eOZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 95963465 total, 71641 skipped (flags/unmapped)
Fragments: 48128302 total (47716614 tlen-paired, 3888 hash-paired, 326 singletons, 14922 discordant, 392552 orphans, 14049 too large [>5000 bp], 19798608 duplicates)
Reads: 104415255 total, 62126 skipped (flags/unmapped)
Fragments: 52373077 total (51941658 tlen-paired, 4301 hash-paired, 492 singletons, 10711 discordant, 415915 orphans, 11691 too large [>5000 bp], 21246707 duplicates)
Reads: 114939478 total, 115286 skipped (flags/unmapped)
Fragments: 57826892 total (56540594 tlen-paired, 3275 hash-paired, 410 singletons, 252383 discordant, 1030230 orphans, 100524 too large [>5000 bp], 23938091 duplicates)
Reads: 114105687 total, 65130 skipped (flags/unmapped)
Fragments: 57238552 total (56731591 tlen-paired, 5029 hash-paired, 365 singletons, 16405 discordant, 485162 orphans, 24490 too large [>5000 bp], 23748751 duplicates)