Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_7WN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7WN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7WN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7WN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 121100362 total, 86161 skipped (flags/unmapped)
Fragments: 60736998 total (60226132 tlen-paired, 5327 hash-paired, 544 singletons, 17820 discordant, 487175 orphans, 13962 too large [>5000 bp], 25975772 duplicates)
Reads: 131292265 total, 74448 skipped (flags/unmapped)
Fragments: 65857318 total (65315210 tlen-paired, 3729 hash-paired, 675 singletons, 13554 discordant, 524150 orphans, 14003 too large [>5000 bp], 27684913 duplicates)
Reads: 130684908 total, 79554 skipped (flags/unmapped)
Fragments: 65554442 total (64964903 tlen-paired, 5991 hash-paired, 474 singletons, 16370 discordant, 566704 orphans, 31824 too large [>5000 bp], 28155860 duplicates)
Reads: 145163909 total, 146557 skipped (flags/unmapped)
Fragments: 73013962 total (71424722 tlen-paired, 4758 hash-paired, 596 singletons, 319564 discordant, 1264322 orphans, 127173 too large [>5000 bp], 31295597 duplicates)