Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dXQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dXQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dXQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dXQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92183693 total, 57677 skipped (flags/unmapped)
Fragments: 46226186 total (45865110 tlen-paired, 4416 hash-paired, 358 singletons, 9742 discordant, 346560 orphans, 10281 too large [>5000 bp], 18763494 duplicates)
Reads: 86092310 total, 62325 skipped (flags/unmapped)
Fragments: 43170344 total (42822528 tlen-paired, 4021 hash-paired, 371 singletons, 13966 discordant, 329458 orphans, 9563 too large [>5000 bp], 17738604 duplicates)
Reads: 102055732 total, 58353 skipped (flags/unmapped)
Fragments: 51176607 total (50755665 tlen-paired, 4747 hash-paired, 348 singletons, 14564 discordant, 401283 orphans, 22898 too large [>5000 bp], 21179333 duplicates)
Reads: 103429046 total, 105877 skipped (flags/unmapped)
Fragments: 51999704 total (50944350 tlen-paired, 4062 hash-paired, 402 singletons, 205405 discordant, 845485 orphans, 84824 too large [>5000 bp], 21467294 duplicates)