Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_QNP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QNP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QNP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QNP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86679841 total, 49965 skipped (flags/unmapped)
Fragments: 43464733 total (43133262 tlen-paired, 3607 hash-paired, 377 singletons, 8958 discordant, 318529 orphans, 9658 too large [>5000 bp], 16248748 duplicates)
Reads: 80025572 total, 58930 skipped (flags/unmapped)
Fragments: 40126333 total (39803795 tlen-paired, 4112 hash-paired, 387 singletons, 13500 discordant, 304539 orphans, 9451 too large [>5000 bp], 15235869 duplicates)
Reads: 94510461 total, 55640 skipped (flags/unmapped)
Fragments: 47393956 total (46995046 tlen-paired, 5798 hash-paired, 319 singletons, 14291 discordant, 378502 orphans, 22865 too large [>5000 bp], 18098089 duplicates)
Reads: 96155575 total, 98686 skipped (flags/unmapped)
Fragments: 48337627 total (47370493 tlen-paired, 5024 hash-paired, 344 singletons, 189283 discordant, 772483 orphans, 77231 too large [>5000 bp], 18403950 duplicates)