Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8U-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8U-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8U-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8U-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84908535 total, 57201 skipped (flags/unmapped)
Fragments: 42560830 total (42257442 tlen-paired, 3540 hash-paired, 363 singletons, 12086 discordant, 287399 orphans, 8718 too large [>5000 bp], 16098591 duplicates)
Reads: 92047027 total, 49531 skipped (flags/unmapped)
Fragments: 46142663 total (45824928 tlen-paired, 3637 hash-paired, 465 singletons, 8626 discordant, 305007 orphans, 8821 too large [>5000 bp], 17214439 duplicates)
Reads: 100425614 total, 53066 skipped (flags/unmapped)
Fragments: 50343225 total (49976320 tlen-paired, 3496 hash-paired, 299 singletons, 11881 discordant, 351229 orphans, 18813 too large [>5000 bp], 19139270 duplicates)
Reads: 101957495 total, 93873 skipped (flags/unmapped)
Fragments: 51231614 total (50301149 tlen-paired, 2240 hash-paired, 368 singletons, 182085 discordant, 745772 orphans, 73267 too large [>5000 bp], 19480313 duplicates)