Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_4YY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_4YY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_4YY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_4YY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77387741 total, 59450 skipped (flags/unmapped)
Fragments: 38851915 total (38438354 tlen-paired, 3362 hash-paired, 386 singletons, 12686 discordant, 397127 orphans, 10987 too large [>5000 bp], 15833456 duplicates)
Reads: 83053092 total, 51203 skipped (flags/unmapped)
Fragments: 41704531 total (41263257 tlen-paired, 3555 hash-paired, 445 singletons, 8822 discordant, 428452 orphans, 10862 too large [>5000 bp], 16747248 duplicates)
Reads: 91625464 total, 52231 skipped (flags/unmapped)
Fragments: 46008204 total (45511261 tlen-paired, 4548 hash-paired, 321 singletons, 12660 discordant, 479414 orphans, 18280 too large [>5000 bp], 18837340 duplicates)
Reads: 93129766 total, 94326 skipped (flags/unmapped)
Fragments: 46961703 total (45578346 tlen-paired, 1497 hash-paired, 369 singletons, 276808 discordant, 1104683 orphans, 108543 too large [>5000 bp], 19098124 duplicates)