Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cQZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cQZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_cQZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cQZ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83910671 total, 59151 skipped (flags/unmapped)
Fragments: 42087487 total (41724761 tlen-paired, 4588 hash-paired, 339 singletons, 12320 discordant, 345479 orphans, 11182 too large [>5000 bp], 16222167 duplicates)
Reads: 89999146 total, 49246 skipped (flags/unmapped)
Fragments: 45150082 total (44769228 tlen-paired, 3670 hash-paired, 483 singletons, 8378 discordant, 368323 orphans, 9271 too large [>5000 bp], 17098573 duplicates)
Reads: 98624723 total, 53654 skipped (flags/unmapped)
Fragments: 49479699 total (49032524 tlen-paired, 3378 hash-paired, 308 singletons, 12834 discordant, 430655 orphans, 21317 too large [>5000 bp], 19209103 duplicates)
Reads: 100488081 total, 93962 skipped (flags/unmapped)
Fragments: 50570915 total (49404540 tlen-paired, 4341 hash-paired, 344 singletons, 230215 discordant, 931475 orphans, 92054 too large [>5000 bp], 19549913 duplicates)