Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86025065 total, 51082 skipped (flags/unmapped)
Fragments: 43131655 total (42779668 tlen-paired, 5305 hash-paired, 259 singletons, 14987 discordant, 331436 orphans, 21184 too large [>5000 bp], 16288563 duplicates)
Reads: 72767589 total, 55173 skipped (flags/unmapped)
Fragments: 36479864 total (36194955 tlen-paired, 3491 hash-paired, 358 singletons, 14634 discordant, 266426 orphans, 9736 too large [>5000 bp], 13690053 duplicates)
Reads: 78428975 total, 46724 skipped (flags/unmapped)
Fragments: 39320831 total (39031789 tlen-paired, 3600 hash-paired, 338 singletons, 9871 discordant, 275233 orphans, 8080 too large [>5000 bp], 14547390 duplicates)
Reads: 86778284 total, 89565 skipped (flags/unmapped)
Fragments: 43601056 total (42812483 tlen-paired, 3542 hash-paired, 352 singletons, 150310 discordant, 634369 orphans, 60664 too large [>5000 bp], 16432326 duplicates)