Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2VO-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2VO-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2VO-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2VO-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78924570 total, 43181 skipped (flags/unmapped)
Fragments: 39563111 total (39294755 tlen-paired, 2568 hash-paired, 377 singletons, 7047 discordant, 258364 orphans, 6954 too large [>5000 bp], 14235338 duplicates)
Reads: 71860547 total, 49206 skipped (flags/unmapped)
Fragments: 36019895 total (35763225 tlen-paired, 3543 hash-paired, 245 singletons, 10014 discordant, 242868 orphans, 7332 too large [>5000 bp], 13168473 duplicates)
Reads: 77953889 total, 45271 skipped (flags/unmapped)
Fragments: 39082002 total (38781062 tlen-paired, 5609 hash-paired, 222 singletons, 9387 discordant, 285722 orphans, 15279 too large [>5000 bp], 14369083 duplicates)
Reads: 86065483 total, 82538 skipped (flags/unmapped)
Fragments: 43238065 total (42463160 tlen-paired, 3996 hash-paired, 289 singletons, 153378 discordant, 617242 orphans, 62173 too large [>5000 bp], 15875486 duplicates)