Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_GSR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_GSR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_GSR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GSR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66901724 total, 49830 skipped (flags/unmapped)
Fragments: 33544815 total (33278883 tlen-paired, 3183 hash-paired, 312 singletons, 7773 discordant, 254664 orphans, 8620 too large [>5000 bp], 12762643 duplicates)
Reads: 73375793 total, 41467 skipped (flags/unmapped)
Fragments: 36801905 total (36509333 tlen-paired, 2448 hash-paired, 402 singletons, 5550 discordant, 284172 orphans, 7545 too large [>5000 bp], 13709829 duplicates)
Reads: 79113180 total, 46212 skipped (flags/unmapped)
Fragments: 39676921 total (39343168 tlen-paired, 5271 hash-paired, 294 singletons, 7994 discordant, 320194 orphans, 16807 too large [>5000 bp], 15173212 duplicates)
Reads: 79801751 total, 81950 skipped (flags/unmapped)
Fragments: 40149340 total (39250549 tlen-paired, 3473 hash-paired, 356 singletons, 176581 discordant, 718381 orphans, 69929 too large [>5000 bp], 15285041 duplicates)