Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_ehU-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_ehU-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ehU-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ehU-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 117110076 total, 94297 skipped (flags/unmapped)
Fragments: 58733968 total (58219289 tlen-paired, 4725 hash-paired, 482 singletons, 24249 discordant, 485223 orphans, 16774 too large [>5000 bp], 25543291 duplicates)
Reads: 126023758 total, 83292 skipped (flags/unmapped)
Fragments: 63217571 total (62662567 tlen-paired, 7387 hash-paired, 436 singletons, 20469 discordant, 526712 orphans, 16236 too large [>5000 bp], 27820163 duplicates)
Reads: 127775387 total, 76630 skipped (flags/unmapped)
Fragments: 64090731 total (63556038 tlen-paired, 3762 hash-paired, 668 singletons, 17094 discordant, 513169 orphans, 15566 too large [>5000 bp], 27545037 duplicates)
Reads: 139958708 total, 151296 skipped (flags/unmapped)
Fragments: 70375458 total (68902149 tlen-paired, 4302 hash-paired, 545 singletons, 290761 discordant, 1177701 orphans, 117371 too large [>5000 bp], 30906936 duplicates)