Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ND-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ND-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ND-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ND-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 119463014 total, 82287 skipped (flags/unmapped)
Fragments: 59898460 total (59427922 tlen-paired, 4858 hash-paired, 609 singletons, 20143 discordant, 444928 orphans, 14672 too large [>5000 bp], 25992296 duplicates)
Reads: 129111188 total, 71058 skipped (flags/unmapped)
Fragments: 64742192 total (64254069 tlen-paired, 5373 hash-paired, 667 singletons, 14344 discordant, 467739 orphans, 12076 too large [>5000 bp], 27686155 duplicates)
Reads: 128932230 total, 75381 skipped (flags/unmapped)
Fragments: 64649041 total (64124976 tlen-paired, 6201 hash-paired, 444 singletons, 17645 discordant, 499775 orphans, 29493 too large [>5000 bp], 28256507 duplicates)
Reads: 142904152 total, 134777 skipped (flags/unmapped)
Fragments: 71819823 total (70447637 tlen-paired, 5756 hash-paired, 592 singletons, 273703 discordant, 1092135 orphans, 111228 too large [>5000 bp], 31329461 duplicates)