Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_PJW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_PJW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_PJW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_PJW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91543734 total, 66429 skipped (flags/unmapped)
Fragments: 45960421 total (45477682 tlen-paired, 4749 hash-paired, 415 singletons, 14259 discordant, 463316 orphans, 10097 too large [>5000 bp], 19016766 duplicates)
Reads: 98832966 total, 61090 skipped (flags/unmapped)
Fragments: 49621145 total (49107334 tlen-paired, 5919 hash-paired, 427 singletons, 9740 discordant, 497725 orphans, 13869 too large [>5000 bp], 20241779 duplicates)
Reads: 108411018 total, 59267 skipped (flags/unmapped)
Fragments: 54435828 total (53839680 tlen-paired, 3406 hash-paired, 327 singletons, 14893 discordant, 577522 orphans, 28972 too large [>5000 bp], 22626613 duplicates)
Reads: 110136021 total, 110705 skipped (flags/unmapped)
Fragments: 55527817 total (53917665 tlen-paired, 3050 hash-paired, 430 singletons, 319692 discordant, 1286980 orphans, 128546 too large [>5000 bp], 22947621 duplicates)