Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_e4m-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e4m-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e4m-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e4m-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 38388743 total, 29283 skipped (flags/unmapped)
Fragments: 19240090 total (19101147 tlen-paired, 2433 hash-paired, 161 singletons, 6462 discordant, 129887 orphans, 4664 too large [>5000 bp], 6882623 duplicates)
Reads: 41558720 total, 25029 skipped (flags/unmapped)
Fragments: 20830348 total (20689063 tlen-paired, 1757 hash-paired, 201 singletons, 4209 discordant, 135118 orphans, 4157 too large [>5000 bp], 7301330 duplicates)
Reads: 45161811 total, 26499 skipped (flags/unmapped)
Fragments: 22637715 total (22468329 tlen-paired, 2011 hash-paired, 165 singletons, 6343 discordant, 160867 orphans, 10457 too large [>5000 bp], 8108482 duplicates)
Reads: 45722341 total, 45087 skipped (flags/unmapped)
Fragments: 22967786 total (22568817 tlen-paired, 1955 hash-paired, 209 singletons, 76732 discordant, 320073 orphans, 30982 too large [>5000 bp], 8236909 duplicates)