Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BCLB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BCLB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BCLB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99661906 total, 54554 skipped (flags/unmapped)
Fragments: 50001548 total (49569582 tlen-paired, 3339 hash-paired, 475 singletons, 11401 discordant, 416751 orphans, 10741 too large [>5000 bp], 20673948 duplicates)
Reads: 91714206 total, 64629 skipped (flags/unmapped)
Fragments: 46008090 total (45598652 tlen-paired, 3475 hash-paired, 372 singletons, 15646 discordant, 389945 orphans, 11857 too large [>5000 bp], 19363759 duplicates)
Reads: 98971802 total, 57541 skipped (flags/unmapped)
Fragments: 49654521 total (49190148 tlen-paired, 3745 hash-paired, 307 singletons, 14557 discordant, 445764 orphans, 25645 too large [>5000 bp], 20987671 duplicates)
Reads: 110328346 total, 105390 skipped (flags/unmapped)
Fragments: 55507675 total (54262709 tlen-paired, 3257 hash-paired, 397 singletons, 250339 discordant, 990973 orphans, 99488 too large [>5000 bp], 23382976 duplicates)