Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_DTW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DTW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DTW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DTW-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110517207 total, 77659 skipped (flags/unmapped)
Fragments: 55414446 total (54980032 tlen-paired, 4184 hash-paired, 588 singletons, 15364 discordant, 414278 orphans, 12761 too large [>5000 bp], 23308273 duplicates)
Reads: 118519358 total, 67677 skipped (flags/unmapped)
Fragments: 59432649 total (58977738 tlen-paired, 3686 hash-paired, 640 singletons, 10588 discordant, 439997 orphans, 13510 too large [>5000 bp], 24659266 duplicates)
Reads: 130549723 total, 70660 skipped (flags/unmapped)
Fragments: 65467689 total (64929364 tlen-paired, 7048 hash-paired, 379 singletons, 15586 discordant, 515312 orphans, 29688 too large [>5000 bp], 27676580 duplicates)
Reads: 132493207 total, 128539 skipped (flags/unmapped)
Fragments: 66622108 total (65246907 tlen-paired, 4583 hash-paired, 451 singletons, 271596 discordant, 1098571 orphans, 109737 too large [>5000 bp], 28093825 duplicates)