Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_356-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_356-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_356-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_356-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82347484 total, 49026 skipped (flags/unmapped)
Fragments: 41271673 total (40999099 tlen-paired, 3420 hash-paired, 429 singletons, 6734 discordant, 261991 orphans, 8766 too large [>5000 bp], 14526229 duplicates)
Reads: 76332342 total, 53592 skipped (flags/unmapped)
Fragments: 38254402 total (37996334 tlen-paired, 2830 hash-paired, 361 singletons, 9440 discordant, 245437 orphans, 7872 too large [>5000 bp], 13661052 duplicates)
Reads: 89977625 total, 50348 skipped (flags/unmapped)
Fragments: 45097549 total (44769356 tlen-paired, 4106 hash-paired, 306 singletons, 9778 discordant, 314003 orphans, 23244 too large [>5000 bp], 16177370 duplicates)
Reads: 91046090 total, 93498 skipped (flags/unmapped)
Fragments: 45732642 total (44925833 tlen-paired, 3815 hash-paired, 346 singletons, 158242 discordant, 644406 orphans, 66030 too large [>5000 bp], 16392608 duplicates)