Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_ILP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_ILP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_ILP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_ILP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86229935 total, 59026 skipped (flags/unmapped)
Fragments: 43247722 total (42886207 tlen-paired, 3379 hash-paired, 434 singletons, 14713 discordant, 342989 orphans, 9444 too large [>5000 bp], 17025655 duplicates)
Reads: 93140564 total, 49544 skipped (flags/unmapped)
Fragments: 46715942 total (46341115 tlen-paired, 3362 hash-paired, 447 singletons, 10241 discordant, 360777 orphans, 10180 too large [>5000 bp], 18144605 duplicates)
Reads: 103020001 total, 98816 skipped (flags/unmapped)
Fragments: 51813287 total (50719423 tlen-paired, 3376 hash-paired, 390 singletons, 211837 discordant, 878261 orphans, 86631 too large [>5000 bp], 20505944 duplicates)
Reads: 101887691 total, 56462 skipped (flags/unmapped)
Fragments: 51103305 total (50658384 tlen-paired, 5630 hash-paired, 377 singletons, 15050 discordant, 423864 orphans, 24430 too large [>5000 bp], 20252898 duplicates)