Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_6SG-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_6SG-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_6SG-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_6SG-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103826360 total, 78937 skipped (flags/unmapped)
Fragments: 52070476 total (51623234 tlen-paired, 4629 hash-paired, 440 singletons, 19594 discordant, 422579 orphans, 14745 too large [>5000 bp], 22330197 duplicates)
Reads: 111487053 total, 61849 skipped (flags/unmapped)
Fragments: 55921308 total (55462906 tlen-paired, 4583 hash-paired, 598 singletons, 12641 discordant, 440580 orphans, 11883 too large [>5000 bp], 23671058 duplicates)
Reads: 123798495 total, 122460 skipped (flags/unmapped)
Fragments: 62269847 total (60935389 tlen-paired, 4857 hash-paired, 511 singletons, 257764 discordant, 1071326 orphans, 104089 too large [>5000 bp], 26811111 duplicates)
Reads: 122569536 total, 68327 skipped (flags/unmapped)
Fragments: 61478017 total (60935359 tlen-paired, 4626 hash-paired, 474 singletons, 19023 discordant, 518535 orphans, 32092 too large [>5000 bp], 26518311 duplicates)