Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BFAI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFAI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFAI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFAI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73189883 total, 51985 skipped (flags/unmapped)
Fragments: 36696329 total (36411622 tlen-paired, 3326 hash-paired, 345 singletons, 11097 discordant, 269939 orphans, 7762 too large [>5000 bp], 14642860 duplicates)
Reads: 79057050 total, 43803 skipped (flags/unmapped)
Fragments: 39642769 total (39345408 tlen-paired, 2662 hash-paired, 426 singletons, 7522 discordant, 286751 orphans, 7443 too large [>5000 bp], 15578070 duplicates)
Reads: 86600042 total, 49560 skipped (flags/unmapped)
Fragments: 43421990 total (43074888 tlen-paired, 5873 hash-paired, 268 singletons, 11555 discordant, 329406 orphans, 18088 too large [>5000 bp], 17369966 duplicates)
Reads: 87444493 total, 88828 skipped (flags/unmapped)
Fragments: 43959810 total (43080552 tlen-paired, 3778 hash-paired, 327 singletons, 171587 discordant, 703566 orphans, 69969 too large [>5000 bp], 17561420 duplicates)