Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_67O-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_67O-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_67O-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_67O-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88724635 total, 66893 skipped (flags/unmapped)
Fragments: 44476377 total (44137320 tlen-paired, 5233 hash-paired, 356 singletons, 15980 discordant, 317488 orphans, 11416 too large [>5000 bp], 17427607 duplicates)
Reads: 95391054 total, 52963 skipped (flags/unmapped)
Fragments: 47824266 total (47480849 tlen-paired, 3385 hash-paired, 460 singletons, 11149 discordant, 328423 orphans, 9221 too large [>5000 bp], 18575722 duplicates)
Reads: 104732855 total, 58978 skipped (flags/unmapped)
Fragments: 52507414 total (52097771 tlen-paired, 3886 hash-paired, 341 singletons, 16354 discordant, 389062 orphans, 24226 too large [>5000 bp], 20768452 duplicates)
Reads: 105918956 total, 106075 skipped (flags/unmapped)
Fragments: 53216493 total (52259093 tlen-paired, 4159 hash-paired, 415 singletons, 184084 discordant, 768742 orphans, 74526 too large [>5000 bp], 21017457 duplicates)