Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_01J-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_01J-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_01J-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_01J-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97736086 total, 67533 skipped (flags/unmapped)
Fragments: 48981342 total (48642319 tlen-paired, 4390 hash-paired, 423 singletons, 14850 discordant, 319360 orphans, 12826 too large [>5000 bp], 20778238 duplicates)
Reads: 106538449 total, 58256 skipped (flags/unmapped)
Fragments: 53396945 total (53045756 tlen-paired, 4592 hash-paired, 496 singletons, 10144 discordant, 335957 orphans, 11378 too large [>5000 bp], 22369440 duplicates)
Reads: 115526630 total, 60080 skipped (flags/unmapped)
Fragments: 57906789 total (57487949 tlen-paired, 7350 hash-paired, 334 singletons, 15362 discordant, 395794 orphans, 24550 too large [>5000 bp], 24761384 duplicates)
Reads: 116489650 total, 108678 skipped (flags/unmapped)
Fragments: 58512391 total (57520605 tlen-paired, 3725 hash-paired, 410 singletons, 189317 discordant, 798334 orphans, 77467 too large [>5000 bp], 25018791 duplicates)