Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_7LT-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7LT-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7LT-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_7LT-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64512979 total, 49220 skipped (flags/unmapped)
Fragments: 32354308 total (32078553 tlen-paired, 3555 hash-paired, 312 singletons, 12463 discordant, 259425 orphans, 7440 too large [>5000 bp], 11528097 duplicates)
Reads: 69872864 total, 41727 skipped (flags/unmapped)
Fragments: 35043908 total (34759640 tlen-paired, 2984 hash-paired, 365 singletons, 8643 discordant, 272276 orphans, 7981 too large [>5000 bp], 12274820 duplicates)
Reads: 77073993 total, 76621 skipped (flags/unmapped)
Fragments: 38759224 total (37955152 tlen-paired, 3864 hash-paired, 261 singletons, 154898 discordant, 645049 orphans, 62117 too large [>5000 bp], 13854791 duplicates)
Reads: 76193531 total, 44241 skipped (flags/unmapped)
Fragments: 38214249 total (37884627 tlen-paired, 3863 hash-paired, 268 singletons, 12347 discordant, 313144 orphans, 17102 too large [>5000 bp], 13696118 duplicates)