Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_b2o-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_b2o-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b2o-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b2o-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72359338 total, 54992 skipped (flags/unmapped)
Fragments: 36258301 total (36014010 tlen-paired, 3855 hash-paired, 341 singletons, 10110 discordant, 229985 orphans, 9035 too large [>5000 bp], 13424332 duplicates)
Reads: 78891159 total, 44553 skipped (flags/unmapped)
Fragments: 39537029 total (39283178 tlen-paired, 2740 hash-paired, 310 singletons, 6915 discordant, 243886 orphans, 8372 too large [>5000 bp], 14456448 duplicates)
Reads: 86307769 total, 49835 skipped (flags/unmapped)
Fragments: 43256493 total (42955159 tlen-paired, 4362 hash-paired, 308 singletons, 10446 discordant, 286218 orphans, 15737 too large [>5000 bp], 16100895 duplicates)
Reads: 86648673 total, 89022 skipped (flags/unmapped)
Fragments: 43515184 total (42780042 tlen-paired, 3956 hash-paired, 321 singletons, 142621 discordant, 588244 orphans, 58924 too large [>5000 bp], 16217570 duplicates)