Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_3CS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_3CS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_3CS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_3CS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71733864 total, 53680 skipped (flags/unmapped)
Fragments: 35965781 total (35684127 tlen-paired, 4022 hash-paired, 300 singletons, 10656 discordant, 266676 orphans, 7799 too large [>5000 bp], 13800505 duplicates)
Reads: 77392123 total, 43711 skipped (flags/unmapped)
Fragments: 38806931 total (38516001 tlen-paired, 2676 hash-paired, 427 singletons, 7012 discordant, 280815 orphans, 7896 too large [>5000 bp], 14705513 duplicates)
Reads: 85006008 total, 49067 skipped (flags/unmapped)
Fragments: 42627551 total (42275852 tlen-paired, 5292 hash-paired, 277 singletons, 11232 discordant, 334898 orphans, 18507 too large [>5000 bp], 16445528 duplicates)
Reads: 85984994 total, 85530 skipped (flags/unmapped)
Fragments: 43229953 total (42356483 tlen-paired, 3022 hash-paired, 294 singletons, 171520 discordant, 698634 orphans, 69243 too large [>5000 bp], 16634752 duplicates)