Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dPb-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dPb-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dPb-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dPb-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 119136860 total, 92657 skipped (flags/unmapped)
Fragments: 59727284 total (59254506 tlen-paired, 5515 hash-paired, 603 singletons, 23218 discordant, 443442 orphans, 16840 too large [>5000 bp], 24212126 duplicates)
Reads: 129530025 total, 73979 skipped (flags/unmapped)
Fragments: 64945034 total (64461565 tlen-paired, 5839 hash-paired, 668 singletons, 16390 discordant, 460572 orphans, 13609 too large [>5000 bp], 25962755 duplicates)
Reads: 127482428 total, 76471 skipped (flags/unmapped)
Fragments: 63924259 total (63409998 tlen-paired, 5748 hash-paired, 477 singletons, 19714 discordant, 488322 orphans, 23119 too large [>5000 bp], 26141208 duplicates)
Reads: 141458253 total, 135324 skipped (flags/unmapped)
Fragments: 71081228 total (69782400 tlen-paired, 4090 hash-paired, 571 singletons, 254115 discordant, 1040052 orphans, 100548 too large [>5000 bp], 29033914 duplicates)