Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_KLI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KLI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KLI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KLI-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82551902 total, 50231 skipped (flags/unmapped)
Fragments: 41387960 total (41082018 tlen-paired, 3805 hash-paired, 354 singletons, 8070 discordant, 293713 orphans, 9909 too large [>5000 bp], 16118185 duplicates)
Reads: 76547103 total, 57221 skipped (flags/unmapped)
Fragments: 38374660 total (38083179 tlen-paired, 3400 hash-paired, 347 singletons, 11745 discordant, 275989 orphans, 8449 too large [>5000 bp], 15162097 duplicates)
Reads: 91301619 total, 96367 skipped (flags/unmapped)
Fragments: 45886854 total (45001770 tlen-paired, 2908 hash-paired, 334 singletons, 172134 discordant, 709708 orphans, 70793 too large [>5000 bp], 18193504 duplicates)
Reads: 90581867 total, 53338 skipped (flags/unmapped)
Fragments: 45415114 total (45056088 tlen-paired, 4267 hash-paired, 315 singletons, 12016 discordant, 342428 orphans, 20522 too large [>5000 bp], 18059902 duplicates)