Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_GE3-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_GE3-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_GE3-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GE3-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76366903 total, 48605 skipped (flags/unmapped)
Fragments: 38347221 total (37943207 tlen-paired, 3231 hash-paired, 371 singletons, 6911 discordant, 393501 orphans, 8864 too large [>5000 bp], 15829823 duplicates)
Reads: 70569095 total, 52735 skipped (flags/unmapped)
Fragments: 35432948 total (35056958 tlen-paired, 3357 hash-paired, 435 singletons, 9687 discordant, 362511 orphans, 6705 too large [>5000 bp], 14887316 duplicates)
Reads: 83867488 total, 50951 skipped (flags/unmapped)
Fragments: 42113032 total (41651896 tlen-paired, 4821 hash-paired, 303 singletons, 10172 discordant, 445840 orphans, 18308 too large [>5000 bp], 17741619 duplicates)
Reads: 85395846 total, 90370 skipped (flags/unmapped)
Fragments: 43063961 total (41767433 tlen-paired, 3292 hash-paired, 313 singletons, 260934 discordant, 1031989 orphans, 104928 too large [>5000 bp], 18002762 duplicates)