Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BMQR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BMQR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BMQR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BMQR-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85241020 total, 67197 skipped (flags/unmapped)
Fragments: 42828229 total (42311402 tlen-paired, 3345 hash-paired, 433 singletons, 10393 discordant, 502656 orphans, 10227 too large [>5000 bp], 18831058 duplicates)
Reads: 93291203 total, 60017 skipped (flags/unmapped)
Fragments: 46892106 total (46306596 tlen-paired, 2838 hash-paired, 488 singletons, 7348 discordant, 574836 orphans, 11149 too large [>5000 bp], 20178524 duplicates)
Reads: 100865450 total, 61942 skipped (flags/unmapped)
Fragments: 50691808 total (50053507 tlen-paired, 3769 hash-paired, 342 singletons, 10366 discordant, 623824 orphans, 22029 too large [>5000 bp], 22362879 duplicates)
Reads: 103422960 total, 112540 skipped (flags/unmapped)
Fragments: 52267234 total (50354429 tlen-paired, 4302 hash-paired, 359 singletons, 386983 discordant, 1521161 orphans, 148736 too large [>5000 bp], 22820688 duplicates)