Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_SSX-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SSX-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SSX-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SSX-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60838799 total, 42623 skipped (flags/unmapped)
Fragments: 30510722 total (30256014 tlen-paired, 2571 hash-paired, 247 singletons, 10681 discordant, 241209 orphans, 8094 too large [>5000 bp], 11616408 duplicates)
Reads: 65303391 total, 35809 skipped (flags/unmapped)
Fragments: 32752572 total (32491071 tlen-paired, 1921 hash-paired, 300 singletons, 7590 discordant, 251690 orphans, 7214 too large [>5000 bp], 12275094 duplicates)
Reads: 72174449 total, 38724 skipped (flags/unmapped)
Fragments: 36200476 total (35889517 tlen-paired, 2743 hash-paired, 253 singletons, 10563 discordant, 297400 orphans, 16213 too large [>5000 bp], 13823986 duplicates)
Reads: 72734089 total, 72093 skipped (flags/unmapped)
Fragments: 36577961 total (35813489 tlen-paired, 2278 hash-paired, 245 singletons, 148768 discordant, 613181 orphans, 59750 too large [>5000 bp], 13948440 duplicates)