Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_QB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_QB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_QB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_QB-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110462471 total, 73241 skipped (flags/unmapped)
Fragments: 55354020 total (54988527 tlen-paired, 4833 hash-paired, 444 singletons, 16870 discordant, 343346 orphans, 12490 too large [>5000 bp], 22611168 duplicates)
Reads: 120383955 total, 64249 skipped (flags/unmapped)
Fragments: 60327726 total (59945384 tlen-paired, 7185 hash-paired, 520 singletons, 12139 discordant, 362498 orphans, 13636 too large [>5000 bp], 24263398 duplicates)
Reads: 119439927 total, 65633 skipped (flags/unmapped)
Fragments: 59857138 total (59461887 tlen-paired, 5645 hash-paired, 415 singletons, 15256 discordant, 373935 orphans, 17184 too large [>5000 bp], 24595025 duplicates)
Reads: 131878677 total, 120543 skipped (flags/unmapped)
Fragments: 66208910 total (65172616 tlen-paired, 6425 hash-paired, 424 singletons, 203699 discordant, 825746 orphans, 83242 too large [>5000 bp], 27193434 duplicates)