Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_URP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URP-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64436176 total, 53167 skipped (flags/unmapped)
Fragments: 32350226 total (32000630 tlen-paired, 3030 hash-paired, 310 singletons, 10917 discordant, 335339 orphans, 9103 too large [>5000 bp], 12313557 duplicates)
Reads: 69710314 total, 42712 skipped (flags/unmapped)
Fragments: 35007853 total (34634919 tlen-paired, 2040 hash-paired, 376 singletons, 7408 discordant, 363110 orphans, 7691 too large [>5000 bp], 13134037 duplicates)
Reads: 76034208 total, 47573 skipped (flags/unmapped)
Fragments: 38183334 total (37753722 tlen-paired, 3406 hash-paired, 286 singletons, 11291 discordant, 414629 orphans, 17441 too large [>5000 bp], 14600744 duplicates)
Reads: 77334398 total, 89743 skipped (flags/unmapped)
Fragments: 38994636 total (37832935 tlen-paired, 2150 hash-paired, 364 singletons, 230788 discordant, 928399 orphans, 92073 too large [>5000 bp], 14801375 duplicates)