Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ebq-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ebq-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ebq-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ebq-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81171215 total, 61222 skipped (flags/unmapped)
Fragments: 40740207 total (40328960 tlen-paired, 3976 hash-paired, 391 singletons, 14166 discordant, 392714 orphans, 11342 too large [>5000 bp], 16109480 duplicates)
Reads: 87606517 total, 51689 skipped (flags/unmapped)
Fragments: 43977058 total (43545337 tlen-paired, 3307 hash-paired, 447 singletons, 10188 discordant, 417779 orphans, 9469 too large [>5000 bp], 17006421 duplicates)
Reads: 87525070 total, 55014 skipped (flags/unmapped)
Fragments: 43935982 total (43471420 tlen-paired, 3902 hash-paired, 333 singletons, 12468 discordant, 447859 orphans, 23142 too large [>5000 bp], 17483549 duplicates)
Reads: 97420242 total, 99778 skipped (flags/unmapped)
Fragments: 49070427 total (47775920 tlen-paired, 3236 hash-paired, 382 singletons, 262735 discordant, 1028154 orphans, 104073 too large [>5000 bp], 19429594 duplicates)