Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_TAC-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TAC-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TAC-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TAC-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72472732 total, 51561 skipped (flags/unmapped)
Fragments: 36343943 total (36046695 tlen-paired, 2966 hash-paired, 421 singletons, 12145 discordant, 281716 orphans, 7711 too large [>5000 bp], 14070090 duplicates)
Reads: 79125009 total, 46489 skipped (flags/unmapped)
Fragments: 39680197 total (39365545 tlen-paired, 3232 hash-paired, 422 singletons, 8928 discordant, 302070 orphans, 10309 too large [>5000 bp], 15043593 duplicates)
Reads: 78317994 total, 47128 skipped (flags/unmapped)
Fragments: 39279268 total (38934720 tlen-paired, 3851 hash-paired, 311 singletons, 11229 discordant, 329157 orphans, 20899 too large [>5000 bp], 15253327 duplicates)
Reads: 86360004 total, 84529 skipped (flags/unmapped)
Fragments: 43422648 total (42535702 tlen-paired, 2274 hash-paired, 313 singletons, 176495 discordant, 707864 orphans, 69178 too large [>5000 bp], 16835741 duplicates)