Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGKQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGKQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGKQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGKQ-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98242723 total, 59875 skipped (flags/unmapped)
Fragments: 49283815 total (48859695 tlen-paired, 5288 hash-paired, 451 singletons, 8090 discordant, 410291 orphans, 12980 too large [>5000 bp], 20681994 duplicates)
Reads: 91197884 total, 67737 skipped (flags/unmapped)
Fragments: 45745957 total (45346809 tlen-paired, 5533 hash-paired, 377 singletons, 11788 discordant, 381450 orphans, 10030 too large [>5000 bp], 19505854 duplicates)
Reads: 109519509 total, 106567 skipped (flags/unmapped)
Fragments: 55131828 total (53803157 tlen-paired, 3348 hash-paired, 409 singletons, 264347 discordant, 1060567 orphans, 105131 too large [>5000 bp], 23555243 duplicates)
Reads: 107992453 total, 61127 skipped (flags/unmapped)
Fragments: 54182289 total (53683392 tlen-paired, 4230 hash-paired, 359 singletons, 12257 discordant, 482051 orphans, 24579 too large [>5000 bp], 23239229 duplicates)