Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cpY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cpY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cpY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cpY-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68306912 total, 52355 skipped (flags/unmapped)
Fragments: 34231367 total (33992719 tlen-paired, 3089 hash-paired, 368 singletons, 11400 discordant, 223791 orphans, 7991 too large [>5000 bp], 12391528 duplicates)
Reads: 73966604 total, 44788 skipped (flags/unmapped)
Fragments: 37069896 total (36823962 tlen-paired, 3898 hash-paired, 316 singletons, 7878 discordant, 233842 orphans, 8091 too large [>5000 bp], 13270206 duplicates)
Reads: 81249165 total, 82828 skipped (flags/unmapped)
Fragments: 40802497 total (40123944 tlen-paired, 3550 hash-paired, 275 singletons, 129812 discordant, 544916 orphans, 53267 too large [>5000 bp], 14878221 duplicates)
Reads: 80435240 total, 46821 skipped (flags/unmapped)
Fragments: 40316114 total (40021120 tlen-paired, 5237 hash-paired, 310 singletons, 11752 discordant, 277695 orphans, 17098 too large [>5000 bp], 14715288 duplicates)