Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_QL5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QL5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QL5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QL5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93474659 total, 74902 skipped (flags/unmapped)
Fragments: 46875947 total (46474627 tlen-paired, 6020 hash-paired, 419 singletons, 17127 discordant, 377754 orphans, 13018 too large [>5000 bp], 18839716 duplicates)
Reads: 101181143 total, 61650 skipped (flags/unmapped)
Fragments: 50747430 total (50332746 tlen-paired, 4296 hash-paired, 575 singletons, 11803 discordant, 398010 orphans, 11609 too large [>5000 bp], 20147308 duplicates)
Reads: 111438711 total, 116553 skipped (flags/unmapped)
Fragments: 56050062 total (54844819 tlen-paired, 4851 hash-paired, 455 singletons, 234374 discordant, 965563 orphans, 94026 too large [>5000 bp], 22639204 duplicates)
Reads: 110401763 total, 64760 skipped (flags/unmapped)
Fragments: 55377829 total (54913414 tlen-paired, 5290 hash-paired, 384 singletons, 17172 discordant, 441569 orphans, 11649 too large [>5000 bp], 22428055 duplicates)