Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_SYH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SYH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SYH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_SYH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100290142 total, 61347 skipped (flags/unmapped)
Fragments: 50338286 total (49851530 tlen-paired, 3839 hash-paired, 527 singletons, 10226 discordant, 472164 orphans, 12457 too large [>5000 bp], 20833534 duplicates)
Reads: 93369970 total, 69892 skipped (flags/unmapped)
Fragments: 46856555 total (46398606 tlen-paired, 3068 hash-paired, 425 singletons, 14863 discordant, 439593 orphans, 13493 too large [>5000 bp], 19698192 duplicates)
Reads: 112212651 total, 117938 skipped (flags/unmapped)
Fragments: 56529565 total (55027832 tlen-paired, 3212 hash-paired, 480 singletons, 296758 discordant, 1201283 orphans, 118673 too large [>5000 bp], 23819693 duplicates)
Reads: 110568084 total, 63550 skipped (flags/unmapped)
Fragments: 55496655 total (54935073 tlen-paired, 3498 hash-paired, 354 singletons, 15778 discordant, 541952 orphans, 26765 too large [>5000 bp], 23477238 duplicates)