Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_e5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 54182595 total, 42029 skipped (flags/unmapped)
Fragments: 27168360 total (26946062 tlen-paired, 2763 hash-paired, 263 singletons, 10341 discordant, 208931 orphans, 6520 too large [>5000 bp], 10709808 duplicates)
Reads: 59548814 total, 34738 skipped (flags/unmapped)
Fragments: 29861075 total (29630090 tlen-paired, 2717 hash-paired, 324 singletons, 7288 discordant, 220656 orphans, 6453 too large [>5000 bp], 11542685 duplicates)
Reads: 58473524 total, 37836 skipped (flags/unmapped)
Fragments: 29321776 total (29072385 tlen-paired, 3055 hash-paired, 186 singletons, 9118 discordant, 237032 orphans, 14677 too large [>5000 bp], 11572936 duplicates)
Reads: 64699495 total, 66155 skipped (flags/unmapped)
Fragments: 32518616 total (31887238 tlen-paired, 3036 hash-paired, 280 singletons, 124270 discordant, 503792 orphans, 50090 too large [>5000 bp], 12838453 duplicates)