Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_jS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_jS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_jS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_jS-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82183887 total, 46286 skipped (flags/unmapped)
Fragments: 41208879 total (40897491 tlen-paired, 3742 hash-paired, 419 singletons, 8615 discordant, 298612 orphans, 9437 too large [>5000 bp], 14988131 duplicates)
Reads: 76587054 total, 56150 skipped (flags/unmapped)
Fragments: 38396328 total (38094712 tlen-paired, 3055 hash-paired, 345 singletons, 12413 discordant, 285803 orphans, 12198 too large [>5000 bp], 14103121 duplicates)
Reads: 90344565 total, 49981 skipped (flags/unmapped)
Fragments: 45301503 total (44942183 tlen-paired, 3832 hash-paired, 271 singletons, 12658 discordant, 342559 orphans, 17204 too large [>5000 bp], 16748358 duplicates)
Reads: 91308596 total, 89062 skipped (flags/unmapped)
Fragments: 45900442 total (45000817 tlen-paired, 3268 hash-paired, 318 singletons, 175381 discordant, 720658 orphans, 69813 too large [>5000 bp], 16955653 duplicates)