Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BK7B-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BK7B-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BK7B-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BK7B-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83981339 total, 63932 skipped (flags/unmapped)
Fragments: 42137812 total (41739099 tlen-paired, 3011 hash-paired, 391 singletons, 12997 discordant, 382314 orphans, 12244 too large [>5000 bp], 17822269 duplicates)
Reads: 91017461 total, 55983 skipped (flags/unmapped)
Fragments: 45677486 total (45249245 tlen-paired, 4263 hash-paired, 407 singletons, 8936 discordant, 414635 orphans, 10774 too large [>5000 bp], 19056641 duplicates)
Reads: 101039704 total, 110925 skipped (flags/unmapped)
Fragments: 50885518 total (49568318 tlen-paired, 3935 hash-paired, 350 singletons, 261022 discordant, 1051893 orphans, 104993 too large [>5000 bp], 21556947 duplicates)
Reads: 99508799 total, 57080 skipped (flags/unmapped)
Fragments: 49943175 total (49446644 tlen-paired, 6687 hash-paired, 322 singletons, 13667 discordant, 475855 orphans, 20773 too large [>5000 bp], 21244082 duplicates)