Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bST-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bST-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bST-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bST-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91859388 total, 67780 skipped (flags/unmapped)
Fragments: 46046924 total (45709649 tlen-paired, 4291 hash-paired, 382 singletons, 14850 discordant, 317752 orphans, 7947 too large [>5000 bp], 17442477 duplicates)
Reads: 99036134 total, 58983 skipped (flags/unmapped)
Fragments: 49647699 total (49270926 tlen-paired, 3998 hash-paired, 310 singletons, 13808 discordant, 358657 orphans, 20360 too large [>5000 bp], 18916022 duplicates)
Reads: 99771000 total, 57710 skipped (flags/unmapped)
Fragments: 50014166 total (49663466 tlen-paired, 4739 hash-paired, 407 singletons, 10561 discordant, 334993 orphans, 10179 too large [>5000 bp], 18663405 duplicates)
Reads: 109349804 total, 109346 skipped (flags/unmapped)
Fragments: 54926982 total (53960020 tlen-paired, 4548 hash-paired, 385 singletons, 189580 discordant, 772449 orphans, 79664 too large [>5000 bp], 20952262 duplicates)